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Journals:

International Journal of Primatology
American Journal of Primatology
Folia Primatologica
Primates
Neotropical Primates

America Journal of Physical Anthropology
Evolutionary Anthropology
Journal of Human Evolution
Annual Review of Anthropology

Animal Behavior
Behaviour
Behavioral Ecology and Sociobiology

Journal of Animal Ecology
Evolution
Journal of Biogeography
Trends in Ecology and Evolution
Molecular Ecology
Annual Review of Ecology, Evolution and Systematics

Animal Cognition
Trends in Cognitive Sciences
Nature Reviews Neuroscience
Annual Review of Neuroscience

Molecular Phylogenetics and Evolution
Nature Reviews Genetics

Public Library of Science
Journals of the Royal Society
Proceedings of the National Academy of Sciences

Ecological Modeling
Journal of Theoretical Biology
Journal of Artificial Societies and Social Simulation

Philosophy and biology

Nature
Science

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Modeling:

Software carpentry
NetLogo
NetLogo Tutorial by Owen Densmore
Practical Common LIsp by Peter Seibel
Swarm
Tools for Agent-based Modeling (SwarmWiki)
The r-project for statistical computing
Python
How to think like a (python) programmer by Allen B. Downey
Dive into Python by Mark Pilgrim

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Bioinformatics:

NCBI
NISC
EBI
BioAfrica
Computational Sciences at the AMNH
Joe Felsenstein's phylogenetic programs webpage

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GIS:

ESRI

Biodiversity Informatics at the AMNH
Georeferencing Resources at HerpNet.org

Free softwares:

DIVA-GIS
DesktopGarp
Maximum Enthropy Modeling with Maxtnt

Databases:

Biodiversity:

Global Biodiversity Information Facility
MaNIS - mammals
ORBIS - Birds
OBIS - Marine animals and plants
HerpeNet
World Atlas of Biodiversity
NGDS Ecosystems Informatics
WWF Ecoregions
World Database on Protected Areas

Climate:

WorldClim
Paleoclimatology

Topography:

Shuttle Radar Topography Mission (SRTM) 90 meters
Elevation (ETOPOv2) at the NGDC
Topographic Map Generator (uses ETOPO5)
Hydrology (Hydro1k)

Satellite derived (free):

MODIS
AVHRR
Global Land Cover Characterization
Global Land Cover Facility

Other data sources:

The Harvard Geospacial Library
CIESIN at Columbia U.
Geography Network
Seamless Data Distribution System (SDDS)
UC Berkley Online Vegetation and Plant Distribution Maps
EDEN's Global Data Links

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Other NYCEP people:

Tony Di Fiore
Todd Disotell
Ryan Raaum
Marina Cords
Larissa Swedell
Mary Blair

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Random links:

Astronomy Picture of the Day
National Picture of the Day
Oxford Dictionary Word of the Day
PHD Comics
Philosophical Humor
Postmodern Essay Generator